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Galaxy Version: 22.05
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Tools
Full Tool Panel
...by Ontology
EDAM Operations
EDAM Topics
Upload Data
Get Data
Lift-Over
Text Manipulation
Filter and Sort
Join, Subtract and Group
Convert Formats
Extract Features
Fetch Sequences
Fetch Alignments
Get Genomic Scores
Operate on Genomic Intervals
Statistics
Graph/Display Data
Evolution
Motif Tools
genome annotation
Metagenomic analyses
FROGS Metagenomic pipeline
Microbiome Analysis
FASTA manipulation
Phylogeny
NGS: QC and manipulation
NGS: Mapping
NGS: RNA Analysis
NGS: SAM Tools
NGS: Peak Calling/ChIP-seq
NGS: Simulation
NGS: VCF Tools
NGS: Assembly
NGS: Assembly package SPAdes
NGS: Picard Tools
NGS: BCF Tools
NGS: BedTools
NGS: SNP/Indel Annotation
NGS: genomic structural variation
NGS: RNAseq and short-read Nucleotide
Sequence Analysis
Genotyping
Genome editing
Blast
NCBI
Phenotype Association
Metavisitor
MutSpec
Metagenomic_18S
MUMmer
IPPIDB Project
NGS:GATK Tools version 3.6
Transcriptional networks
NGS: deepTools
Annotation
NGS: Assembly package clc
Transcriptomics
Multiple Alignments
Chemicaltoolbox
Animalerie
image analysis
Protein Structure
NGS:GATK Tools versions 4
Proteomics
Metagenomic Analysis
Krakentools: calculates beta diversity (Bray-Curtis dissimilarity)
from Kraken, Krona and Bracken files
Krakentools: Combine multiple Kraken reports
into a combined report file
Krakentools: Calculates alpha diversity
from the Bracken abundance estimation file
plotProfile
creates a profile plot for score distributions across genomic regions
NGS: SNP Calling
Assembly
FASTA/FASTQ
Nanopore
Phylodynamics
Delly call
and genotype structural variants
Delly merge
structural variants across/within BCF/VCF file(s)
Delly long-read (lr)
optimized calling and genotyping of structural variants
Salmon quant
Perform dual-phase, reads or mapping-based estimation of transcript abundance from RNA-seq reads
Alevin
Quantification and analysis of 3-prime tagged-end single-cell sequencing data
DefenseFinder
systematically detect known anti-phage systems
Built-in Converters
Workflows
All workflows
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